Non-CG DNA Methylation Is a Biomarker for Assessing Endodermal Differentiation Capacity in Pluripotent Stem Cells Scientists report that a reduction in non-CG methylation is associated with impaired differentiation capacity into endodermal lineages. [Nat Commun] Full Article | Press Release RS-1 Enhances CRISPR/Cas9- and TALEN-Mediated Knock-in Efficiency Investigators hypothesized that inhibiting non-homologous end joining (NHEJ) or enhancing homology-directed repair (HDR) will improve nuclease-mediated knock-in efficiency. They showed that the in vitro application of an HDR enhancer, RS-1, increases the knock-in efficiency by two- to five-fold at different loci, whereas NHEJ inhibitor SCR7 has minimal effects. [Nat Commun] Full Article Maternal LSD1/KDM1A Is an Essential Regulator of Chromatin and Transcription Landscapes during Zygotic Genome Activation Investigators explored the function of the oocyte-inherited pool of a histone H3K4 and K9 demethylase, LSD1/KDM1A during early mouse development. KDM1A deficiency resulted in developmental arrest by the two-cell stage, accompanied by dramatic and stepwise alterations in H3K9 and H3K4 methylation patterns. [eLife] Abstract | Full Article Hierarchical Oct4 Binding in Concert with Primed Epigenetic Rearrangements during Somatic Cell Reprogramming The authors profiled Oct4 occupancy, epigenetic changes, and gene expression in reprogramming. They found that Oct4 binds in a hierarchical manner to target sites with primed epigenetic modifications. [Cell Rep] Full Article | Graphical Abstract Nac1 Coordinates a Sub-network of Pluripotency Factors to Regulate Embryonic Stem Cell Differentiation Scientists used integrative methods to show that external signals induce reorganization of the mouse embryonic stem cell pluripotency network and that a sub-network of four factors, Nac1, Oct4, Tcf3, and Sox2, regulates their differentiation into the alternative mesendodermal and neuroectodermal fates. [Cell Rep] Full Article | Graphical Abstract Characterization of Induced Pluripotent Stem Cell Microvesicle Genesis, Morphology and Pluripotent Content Investigators characterized induced pluripotent stem cell (iPSC) microvesicles (MV) genesis, content and fusion to retinal progenitor cells in vitro. They demonstrated that the mRNA and protein cargo in iPSC MVs have established roles in maintenance of pluripotency. [Sci Rep] Full Article Generating Trunk Neural Crest from Human Pluripotent Stem Cells Researchers demonstrated that current protocols to differentiate human pluripotent stem cells to neural crest cells (NCCs) are biased toward cranial NCC. [Sci Rep] Full Article miR-302 Regulates Pluripotency, Teratoma Formation and Differentiation in Stem Cells via an AKT1/OCT4-Dependent Manner Scientists determined that the downregulation of miR-302 suppresses teratoma formation, hampers self-renewal and pluripotency, and promotes human pluripotent stem cell differentiation. [Cell Death Dis] Full Article Escape Mutations, Ganciclovir Resistance, and Teratoma Formation in Human iPSCs Expressing an HSVtk Suicide Gene Investigators engineered a lentivirally encoded herpes simplex virus thymidine kinase (HSVtk) with expression restricted to undifferentiated human pluripotent stem cells through regulation by the let7 family of miRNAs. They showed that induced pluripotent stem cells (iPSCs) expressing a let7-regulated HSVtk transgene are selectively killed by ganciclovir (GCV), whereas differentiated cells are fully protected. [Mol Ther Nucleic Acids] Full Article Transplantation of Human-Induced Pluripotent Stem Cells Carried by Self-Assembling Peptide Nanofiber Hydrogel Improves Bone Regeneration in Rat Calvarial Bone Defects Researchers investigated in vivo bone regeneration from transplanted induced pluripotent stem cells (iPSCs). Transplanted iPSCs encapsulated in a nanofiber scaffold regenerated bone in critical-sized defects. [BDJ Open] Full Article |