Immunology of Infectious Disease News Volume 10.17 | May 4 2022

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    2022-05-04 | IIDN 10.17


    Immunology of Infectious Disease News by STEMCELL Technologies
    Vol. 10.17 – 4 May, 2022
    TOP STORY

    Virological Characteristics of the SARS-CoV-2 Omicron BA.2 Spike

    Neutralization experiments revealed that immunity induced by COVID vaccines widely administered to human populations was not effective against the SARS-CoV-2 Omicron lineage, BA.2, similar to BA.1, and that the antigenicity of BA.2 was notably different from that of BA.1.
    [Cell]

    AbstractGraphical Abstract

    Find the Right Antibodies for Your Stem Cell Research. Learn More
    PUBLICATIONSRanked by the impact factor of the journal

    Mutations in the SARS-CoV-2 RNA Dependent RNA Polymerase Confer Resistance to Remdesivir by Distinct Mechanisms

    To better understand factors that promoted or prevented remdesivir (RDV) resistance, the authors passaged SARS-CoV-2 in the presence of increasing concentrations of GS-441524, the parent nucleoside of RDV.
    [Science Translational Medicine]

    Full ArticlePress Release

    Daily Longitudinal Sampling of SARS-CoV-2 Infection Reveals Substantial Heterogeneity in Infectiousness

    Investigators captured the dynamics of infectious virus and viral RNA shedding during acute SARS-CoV-2 infection through daily longitudinal sampling of 60 individuals for up to 14 days.
    [Nature Microbiology]

    Full ArticlePress Release

    SARS-CoV-2-Specific T Cell Epitope Repertoire in Convalescent and mRNA-Vaccinated Individuals

    By performing in-depth comparisons of the SARS-CoV-2-specific T cell epitope repertoire after infection and messenger RNA vaccination, scientists demonstrated that spike-derived epitopes were not dominantly targeted in convalescent individuals compared to non-spike epitopes.
    [Nature Microbiology]

    Full Article

    Broadly Neutralizing Antibodies against Omicron-Included SARS-CoV-2 Variants Induced by Vaccination

    The authors developed a panel of broadly neutralizing antibodies against Omicron and other variants of concern elicited by vaccination of adenovirus-vectored COVID-19 vaccine.
    [Signal Transduction and Targeted Therapy]

    Full Article

    High-Resolution Profiling of MHC II Peptide Presentation Capacity Reveals SARS-CoV-2 CD4 T Cell Targets and Mechanisms of Immune Escape

    Scientists presented MEDi, a novel mammalian epitope display that allowed an unbiased, affordable, high-resolution mapping of MHC peptide presentation capacity.
    [Science Advances]

    Full Article

    Glycemic Control Is Associated with SARS-CoV-2 Breakthrough Infections in Vaccinated Patients with Type 2 Diabetes

    Researchers showed that poor glycaemic control, assessed as mean HbA1c in the post-vaccination period, was associated with lower immune responses and an increased incidence of SARS-CoV-2 breakthrough infections in type 2 diabetes patients vaccinated with mRNA-BNT162b2.
    [Nature Communications]

    Full Article

    Pathophysiological Pathway Differences in Children Who Present with COVID-19 ARDS Compared to COVID -19 Induced MIS-C

    Investigators utilized mass spectrometry proteomics to determine the plasma proteins expressed in healthy children pre-pandemic, children with multisystem inflammatory syndrome and children with COVID-19 induced acute respiratory distress syndrome (ARDS).
    [Nature Communications]

    Full Article

    Single-Cell Transcriptomics Reveal a Unique Memory-Like NK Cell Subset That Accumulates with Aging and Correlates with Disease Severity in COVID-19

    The authors identified a unique memory-like NK cell subset that accumulated with aging and correlated with disease severity in COVID-19.
    [Genome Medicine]

    Full Article

    Multimodal Profiling of Lung Granulomas in Macaques Reveals Cellular Correlates of Tuberculosis Control

    Researchers identified correlates of bacterial control in cynomolgus macaque lung granulomas by co-registering longitudinal positron emission tomography and computed tomography imaging, single-cell RNA sequencing, and measures of bacterial clearance.
    [Immunity]

    Full ArticleGraphical Abstract

    Intracellular Infection and Immune System Cues Rewire Adipocytes to Acquire Immune Function

    Following subcutaneous bacterial infection, adipocytes surrounding draining lymph nodes initiated a transcriptional response indicative of stimulation with IFN-γ and a shift away from lipid metabolism toward an immunologic function.
    [Cell Metabolism]

    AbstractGraphical Abstract

    Global Spatial Dynamics and Vaccine-Induced Fitness Changes of Bordetella pertussis

    The authors used 3344 sequences from 23 countries to show that, on average, there are 28.1 transmission chains of Bordetella pertussis circulating within a subnational region, with the number of chains strongly associated with host population size.
    [Science Translational Medicine]

    Abstract

    Selective Clonal Persistence of Human Retroviruses In Vivo: Radial Chromatin Organization, Integration Site, and Host Transcription

    Researchers compared >160,000 human T cell leukemia virus type 1 (HTLV-1) integration sites from T cells isolated ex vivo from naturally infected individuals with >230,000 HTLV-1 integration sites from in vitro infection to identify genomic features that determined selective clonal survival.
    [Science Advances]

    Full Article

    Bitter Taste Signaling in Tracheal Epithelial Brush Cells Elicits Innate Immune Responses to Bacterial Infection

    Scientists demonstrated that brush cell signaling stimulated adjacent sensory nerve endings in the trachea to release the neuropeptides CGRP and Substance P that mediated plasma extravasation, neutrophil recruitment and diapedesis.
    [Journal of Clinical Investigation]

    AbstractFull ArticleGraphical Abstract

    Genomewide CRISPR Knockout Screen Identified PLAC8 as an Essential Factor for SADS-CoVs Infection

    Using a genome-wide CRISPR knockout screen, investigators identified placenta-associated 8 protein (PLAC8) as an essential host factor for swine acute diarrhea syndrome coronavirus (SADS-CoV) infection.
    [Proceedings of the National Academy of Sciences of the United States of America]

    Full Article

    The Wsp System of Pseudomonas aeruginosa Links Surface Sensing and Cell Envelope Stress

    Researchers provided experimental evidence that cell envelope stress represented an important feature of surface sensing in P. aeruginosa.
    [Proceedings of the National Academy of Sciences of the United States of America]

    Full Article

    Tools and products for your COVID-19 research.
    REVIEWS

    Disentangling the Relative Importance of T Cell Responses in COVID-19: Leading Actors or Supporting Cast?

    The authors discuss the role of vaccine-induced T cells in two distinct stages of infection: firstly, in protection from acquisition of symptomatic SARS-CoV-2 infection following exposure; secondly, if infection does occur, the potential for T cells to reduce the risk of developing severe COVID-19.
    [Nature Reviews Immunology]

    Abstract

    The Human Genetic Epidemiology of COVID-19

    Large-scale genetic association studies, encompassing both rare and common genetic variants, have used different study designs and multiple disease phenotype definitions to identify several genomic regions associated with COVID-19.
    [Nature Reviews Genetics]

    Full Article

    COVID-19 Vaccine Development: Milestones, Lessons and Prospects

    Scientists assess the safety and efficacy of COVID-19 vaccines, including the possible complications and different effects on pregnant women, the elderly, people with immune diseases and AIDS, transplant recipients, and cancer patients.
    [Signal Transduction and Targeted Therapy]

    Full Article

    INDUSTRY AND POLICY NEWS

    RightEye Enters Into Agreement With MIT to Research Ocular Biomarker ‘Signature’ for Lyme Disease

    RightEye has signed a research collaboration agreement with the Massachusetts Institute of Technology (MIT) to study an oculomotor “signature” for Lyme disease.
    [RightEye]

    Press Release

    AB Science Announced the Continuation of the Phase II Study Evaluating Masitinib in Combination with Isoquercetin in COVID-19, Following the Recommendation of the Data and Safety Monitoring Board (DSMB)

    AB Science SA announced the continuation of the Phase II study evaluating masitinib in combination with isoquercetin in COVID-19, following the recommendation of the DSMB.
    [AB Science SA]

    Press Release

    Biomerica Announces FDA Submission for a Test to Detect Helicobacter pylori (H. pylori), a Bacteria That Infects Approximately 35% of the US Population

    Biomerica, Inc. announced it has submitted a 510(k) premarket notification to the US FDA for hp+detect, a new product that detects the presence of the H. pylori bacteria, which infects approximately 35% of the US population.
    [Biomerica, Inc.]

    Press Release

    U.S. Case of Human Avian Influenza A(H5) Virus Reported

    A person has tested positive for avian influenza A(H5) virus in the US, as reported by Colorado and confirmed by the Center for Disease Control. This case occurred in a person who had direct exposure to poultry and was involved in the culling of poultry with presumptive H5N1 bird flu.
    [Center for Disease Control]

    Press Release

    India’s Speedy Approvals of COVID-19 Vaccines Come under Fire

    In February, the Central Drugs Standard Control Organization had authorized the use of Corbevax for adolescents ages 12 to 18. But within weeks, it was revealed that the National Technical Advisory Group on Immunisation had questioned whether Biological E had shown the vaccine is effective.
    [Science Insider]

    Press Release

    FEATURED EVENT

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    JOB OPPORTUNITIES

    Postdoctoral Research Fellow – HIV-1 Viral Pathogenesis

    Ragon Institute of MGH, MIT and Harvard – Cambridge, Massachusetts, United States

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    Francis Crick Institute – London, England, United Kingdom

    Postdoctoral Scientist – Vaccine Development

    The Pirbright Institute – Pirbright, England, United Kingdom

    Tenure Track Faculty Position – Cell Signaling

    New York University College of Dentistry – New York, New York, United States

    Postdoctoral Fellow – Translational Autoimmunity

    Uppsala University – Uppsala, Sweden

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