Immunology of Infectious Disease News Volume 8.47 | Dec 16 2020

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    IIDN 8.47 | Dec 16 2020


    Immunology of Infectious Disease News by STEMCELL Technologies
    Vol. 8.47 – 16 December, 2020
    TOP STORY

    Genetic Mechanisms of Critical Illness in COVID-19

    Scientists report the results of the Genetics Of Mortality In Critical Care genome-wide association study in 2244 critically ill Covid-19 patients from 208 UK intensive care units.
    [Nature]

    Full Article

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    PUBLICATIONSRanked by the impact factor of the journal
    SARS-CoV-2

    COVID-19 Neutralizing Antibodies Predict Disease Severity and Survival

    Investigators examined antibody responses in 113 COVID-19 patients and found that severe cases resulting in intubation or death exhibited increased inflammatory markers, lymphopenia, pro-inflammatory cytokines, and high anti-RBD antibody levels.
    [Cell]

    Abstract

    Analytical Validity of Nanopore Sequencing for Rapid SARS-CoV-2 Genome Analysis

    Researchers performed viral whole-genome sequencing on 157 matched SARS-CoV-2-positive patient specimens and synthetic RNA controls, enabling rigorous evaluation of analytical performance.
    [Nature Communications]

    Full Article

    Temporal
    and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection

    The authors showed analysis of autopsy specimens from 24 patients who succumbed to SARS-CoV-2 infection using a combination of different RNA and protein analytical platforms to characterize inter-patient and intra-patient heterogeneity of pulmonary virus infection.
    [Nature Communications]

    Full Article

    Structure
    and Inhibition of the SARS-CoV-2 Main Protease Reveal Strategy for Developing Dual Inhibitors against Mpro and Cathepsin L

    Scientists solved x-ray crystal structures of Mpro in complex with calpain inhibitors II and XII and three analogs of GC-376. The structure of Mpro with calpain inhibitor II confirmed that the S1 pocket could accommodate a hydrophobic methionine side chain, challenging the idea that a hydrophilic residue was necessary at this position.
    [Science Advances]

    Full Article

    Distinct
    Inflammatory Profiles Distinguish COVID-19 from Influenza with Limited Contributions from Cytokine Storm

    Investigators studied the immune responses in COVID-19 and influenza patients. Compared to patients with influenza, patients with COVID-19 exhibited largely equivalent lymphocyte counts, fewer monocytes, and lower surface human leukocyte antigen-class II expression on selected monocyte populations.
    [Science Advances]

    Full Article

    ORF3a
    of the COVID-19 Virus SARS-CoV-2 Blocks HOPS Complex-Mediated Assembly of the SNARE Complex Required for Autolysosome Formation

    Researchers demonstrated that ORF3a of the COVID-19 virus SARS-CoV-2 inhibits autophagy activity by blocking fusion of autophagosomes/amphisomes with lysosomes.
    [Developmental Cell]

    AbstractGraphical Abstract

    Cell
    Type-Specific Immune Dysregulation in Severely Ill COVID-19 Patients

    Scientists revealed transcriptomic profiles indicative of defective antigen presentation and interferon responsiveness in monocytes from acute respiratory distress syndrome patients, which contrasts with higher responsiveness to interferon signaling in lymphocytes.
    [Cell Reports]

    AbstractGraphical Abstract

    Transcriptomic
    Similarities and Differences in Host Response between SARS-CoV-2 and Other Viral Infections

    The authors studied the whole-blood transcriptomic host response to SARS-CoV-2 using RNAseq from 24 healthy controls and 62 prospectively enrolled patients with COVID-19.
    [iScience]

    AbstractGraphical Abstract

    Identifying
    Epitopes for Cluster of Differentiation and Design of New Peptides Inhibitors against Human SARS-CoV-2 Spike RBD by an In-Silico Approach

    Protein-protein docking was utilized for identifying the critical epitopes in CD147, CD209 and CD299 which are involved in the binding with SARS-CoV-2 Spike receptor binding domain.
    [Heliyon]

    Full Article

    MORE IMMUNOLOGY OF INFECTIOUS DISEASE

    Preexisting
    Immunity Shapes Distinct Antibody Landscapes after Influenza Virus Infection and Vaccination in Humans

    Scientists investigated the impact of preexisting immunity on generation of protective antibody responses to conserved viral epitopes upon influenza virus infection and vaccination in humans.
    [Science Translational Medicine]

    Full Article

    Streptococcus pyogenes
    Infects Human Endometrium by Limiting the Innate Immune Response

    Researchers characterized the early steps of infection in an ex vivo infection model of the human decidua, the puerperal fever portal of entry.
    [Journal of Clinical Investigation]

    AbstractFull Article
    Graphical Abstract

    HIV
    Antibody Fc N-Linked Glycosylation Is Associated with Viral Rebound

    Using a comprehensive antibody Fc-profiling approach, the level of HIV-specific antibody Fc N-galactosylation was significantly associated with time to rebound after treatment discontinuation across three independent cohorts.
    [Cell Reports]

    Full ArticleGraphical Abstract

    Request a copy of the COVID-19 wallchart.
    REVIEWS

    COVID-19 and Graft-Versus-Host Disease: A Tale of Two Diseases

    By analogy, SARS-CoV-2 is a vector that initially homes to pulmonary stem cells that preferentially express the ACE2 receptor, thus potentially incurring similarly robust pathological consequences.
    [Laboratory Investigation]

    Full Article

    Gene Editing and RNAi Approaches for COVID-19 Diagnostics and Therapeutics

    The authors discuss the molecular biology approaches that can revolutionize diagnostic of viral infections and therapies to fight COVID-19 in a highly specific, stable, and efficient way.
    [Gene Therapy]

    Full Article

    INDUSTRY AND POLICY NEWS

    Arch Biopartners Receives Government of Canada Funding to Support Phase II Therapeutic Trial of Metablok for COVID-19

    Arch Biopartners, Inc. announced that the Government of Canada has awarded a contribution of up to $6.7 million from the department of Innovation, Science and Economic Development to support the Phase II development of Metablok, the company’s therapeutic drug candidate to prevent organ inflammation and injury in patients hospitalized with COVID-19.
    [Arch Biopartners, Inc. (Globe Newswire, Inc.)]

    Press Release

    Valneva
    Initiates Phase I/II Clinical Study of Inactivated, Adjuvanted COVID-19 Vaccine Candidate

    Valneva SE announced the initiation of a Phase I/II clinical study for its inactivated, adjuvanted COVID-19 vaccine candidate, VLA2001.
    [Valneva SE]

    Press Release

    RedHill’s
    Phase II/III COVID-19 Candidate Opaganib Reduces ARDS-Related Blood Clotting in Preclinical Model

    RedHill Biopharma Ltd. announced promising preliminary results from a preclinical study within which opaganib, a novel, orally administered sphingosine kinase 2 selective inhibitor, demonstrating a reduction of thrombosis in an acute respiratory distress syndrome (ARDS) – a preclinical animal model designed to measure thrombotic risks.
    [RedHill Biopharma Ltd.]

    Press Release

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    Queen’s University – Kingston, Ontario, Canada

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