The authors integrated single-cell RNA and surface protein data from 500,089 memory T cells to define 31 cell states from 259 individuals in a Peruvian tuberculosis progression cohort.
[Nature Immunology]
6445212 E2QVUMW8 items 1 apa 0 default asc 1 162627 https://www.stemcellsciencenews.com/wp-content/plugins/zotpress/
%7B%22status%22%3A%22success%22%2C%22updateneeded%22%3Afalse%2C%22instance%22%3A%22zotpress-172f6ac3f860058661dc3163e4a66690%22%2C%22meta%22%3A%7B%22request_last%22%3A0%2C%22request_next%22%3A0%2C%22used_cache%22%3Atrue%7D%2C%22data%22%3A%5B%7B%22key%22%3A%22E2QVUMW8%22%2C%22library%22%3A%7B%22id%22%3A6445212%7D%2C%22meta%22%3A%7B%22creatorSummary%22%3A%22Nathan%20et%20al.%22%2C%22parsedDate%22%3A%222021-05-24%22%2C%22numChildren%22%3A1%7D%2C%22bib%22%3A%22%3Cdiv%20class%3D%5C%22csl-bib-body%5C%22%20style%3D%5C%22line-height%3A%202%3B%20padding-left%3A%201em%3B%20text-indent%3A-1em%3B%5C%22%3E%5Cn%20%20%3Cdiv%20class%3D%5C%22csl-entry%5C%22%3ENathan%2C%20A.%2C%20Beynor%2C%20J.%20I.%2C%20Baglaenko%2C%20Y.%2C%20Suliman%2C%20S.%2C%20Ishigaki%2C%20K.%2C%20Asgari%2C%20S.%2C%20Huang%2C%20C.-C.%2C%20Luo%2C%20Y.%2C%20Zhang%2C%20Z.%2C%20Lopez%2C%20K.%2C%20Lindestam%20Arlehamn%2C%20C.%20S.%2C%20Ernst%2C%20J.%20D.%2C%20Jimenez%2C%20J.%2C%20Calder%26%23xF3%3Bn%2C%20R.%20I.%2C%20Lecca%2C%20L.%2C%20Van%20Rhijn%2C%20I.%2C%20Moody%2C%20D.%20B.%2C%20Murray%2C%20M.%20B.%2C%20%26amp%3B%20Raychaudhuri%2C%20S.%20%282021%29.%20Multimodally%20profiling%20memory%20T%20cells%20from%20a%20tuberculosis%20cohort%20identifies%20cell%20state%20associations%20with%20demographics%2C%20environment%20and%20disease.%20%3Ci%3ENature%20Immunology%3C%5C%2Fi%3E%2C%201%26%23x2013%3B13.%20%3Ca%20href%3D%27https%3A%5C%2F%5C%2Fdoi.org%5C%2F10.1038%5C%2Fs41590-021-00933-1%27%3Ehttps%3A%5C%2F%5C%2Fdoi.org%5C%2F10.1038%5C%2Fs41590-021-00933-1%3C%5C%2Fa%3E%20%3Ca%20title%3D%27Cite%20in%20RIS%20Format%27%20class%3D%27zp-CiteRIS%27%20href%3D%27https%3A%5C%2F%5C%2Fwww.stemcellsciencenews.com%5C%2Fwp-content%5C%2Fplugins%5C%2Fzotpress%5C%2Flib%5C%2Frequest%5C%2Frequest.cite.php%3Fapi_user_id%3D6445212%26amp%3Bitem_key%3DE2QVUMW8%27%3ECite%3C%5C%2Fa%3E%20%3C%5C%2Fdiv%3E%5Cn%3C%5C%2Fdiv%3E%22%2C%22data%22%3A%7B%22itemType%22%3A%22journalArticle%22%2C%22title%22%3A%22Multimodally%20profiling%20memory%20T%20cells%20from%20a%20tuberculosis%20cohort%20identifies%20cell%20state%20associations%20with%20demographics%2C%20environment%20and%20disease%22%2C%22creators%22%3A%5B%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Aparna%22%2C%22lastName%22%3A%22Nathan%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Jessica%20I.%22%2C%22lastName%22%3A%22Beynor%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Yuriy%22%2C%22lastName%22%3A%22Baglaenko%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Sara%22%2C%22lastName%22%3A%22Suliman%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Kazuyoshi%22%2C%22lastName%22%3A%22Ishigaki%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Samira%22%2C%22lastName%22%3A%22Asgari%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Chuan-Chin%22%2C%22lastName%22%3A%22Huang%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Yang%22%2C%22lastName%22%3A%22Luo%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Zibiao%22%2C%22lastName%22%3A%22Zhang%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Kattya%22%2C%22lastName%22%3A%22Lopez%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Cecilia%20S.%22%2C%22lastName%22%3A%22Lindestam%20Arlehamn%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Joel%20D.%22%2C%22lastName%22%3A%22Ernst%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Judith%22%2C%22lastName%22%3A%22Jimenez%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Roger%20I.%22%2C%22lastName%22%3A%22Calder%5Cu00f3n%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Leonid%22%2C%22lastName%22%3A%22Lecca%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Ildiko%22%2C%22lastName%22%3A%22Van%20Rhijn%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22D.%20Branch%22%2C%22lastName%22%3A%22Moody%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Megan%20B.%22%2C%22lastName%22%3A%22Murray%22%7D%2C%7B%22creatorType%22%3A%22author%22%2C%22firstName%22%3A%22Soumya%22%2C%22lastName%22%3A%22Raychaudhuri%22%7D%5D%2C%22abstractNote%22%3A%22Multimodal%20T%20cell%20profiling%20can%20enable%20more%20precise%20characterization%20of%20elusive%20cell%20states%20underlying%20disease.%20Here%2C%20we%20integrated%20single-cell%20RNA%20and%20surface%20protein%20data%20from%20500%2C089%20memory%20T%20cells%20to%20define%2031%20cell%20states%20from%20259%20individuals%20in%20a%20Peruvian%20tuberculosis%20%28TB%29%20progression%20cohort.%20At%20immune%20steady%20state%20%3E4%20years%20after%20infection%20and%20disease%20resolution%2C%20we%20found%20that%2C%20after%20accounting%20for%20significant%20effects%20of%20age%2C%20sex%2C%20season%20and%20genetic%20ancestry%20on%20T%20cell%20composition%2C%20a%20polyfunctional%20type%2017%20helper%20T%20%28TH17%29%20cell%5Cu2013like%20effector%20state%20was%20reduced%20in%20abundance%20and%20function%20in%20individuals%20who%20previously%20progressed%20from%20Mycobacterium%20tuberculosis%20%28M.tb%29%20infection%20to%20active%20TB%20disease.%20These%20cells%20are%20capable%20of%20responding%20to%20M.tb%20peptides.%20Deconvoluting%20this%20state%5Cu2014uniquely%20identifiable%20with%20multimodal%20analysis%5Cu2014from%20public%20data%20demonstrated%20that%20its%20depletion%20may%20precede%20and%20persist%20beyond%20active%20disease.%20Our%20study%20demonstrates%20the%20power%20of%20integrative%20multimodal%20single-cell%20profiling%20to%20define%20cell%20states%20relevant%20to%20disease%20and%20other%20traits.%22%2C%22date%22%3A%222021-05-24%22%2C%22language%22%3A%22en%22%2C%22DOI%22%3A%2210.1038%5C%2Fs41590-021-00933-1%22%2C%22ISSN%22%3A%221529-2916%22%2C%22url%22%3A%22https%3A%5C%2F%5C%2Fwww.nature.com%5C%2Farticles%5C%2Fs41590-021-00933-1%22%2C%22collections%22%3A%5B%5D%2C%22dateModified%22%3A%222021-05-26T16%3A58%3A13Z%22%7D%7D%5D%7D
Nathan, A., Beynor, J. I., Baglaenko, Y., Suliman, S., Ishigaki, K., Asgari, S., Huang, C.-C., Luo, Y., Zhang, Z., Lopez, K., Lindestam Arlehamn, C. S., Ernst, J. D., Jimenez, J., Calderón, R. I., Lecca, L., Van Rhijn, I., Moody, D. B., Murray, M. B., & Raychaudhuri, S. (2021). Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease. Nature Immunology, 1–13. https://doi.org/10.1038/s41590-021-00933-1 Cite